Demultiplex: FASTA/FASTQ demultiplexer¶
Versatile NGS demultiplexer with the following features:
Support for FASTA and FASTQ files.
Support for gzip and bzip2 compressed files.
Support for multiple reads per fragment, e.g., paired-end.
Handles barcodes in the header and in the reads.
Handles barcodes at unknown locations in reads (e.g., PacBio or Nanopore barcodes).
Support for selection of part of a barcode.
Allows for mismatches, insertions and deletions.
Barcode guessing by frequency or fixed amount.
Handles large numbers (over one million) of barcodes.
Please see ReadTheDocs for the latest documentation.